Zhao, K., Ma, B., Xu, Y., Stirling, E. & Xu, J. Light exposure mediates circadian rhythms of rhizosphere microbial communities. ISME J 15, 2655–2664 (2021).
Zhang, L. et al. Habitat heterogeneity induced by pyrogenic organic matter in wildfire-perturbed soils mediates bacterial community assembly processes. ISME J 15, 1943–1955 (2021).
Xue, R. et al. Deciphering sample size effect on microbial biogeographic patterns and community assembly processes at centimeter scale. Soil Biology and Biochemistry 156, 108218 (2021).
Ma, B. et al. Soil Biogeochemical Cycle Couplings Inferred from a Function-Taxon Network. Research 2021, 1–10 (2021).
Liu, H. et al. FACS-iChip: a high-efficiency iChip system for microbial ‘dark matter’ mining. Mar Life Sci Technol 3, 162–168 (2021).
2020
Ma, B. et al. Earth microbial co-occurrence network reveals interconnection pattern across microbiomes. Microbiome 8, 82 (2020).
Lv, X., Ma, B., Lee, K. & Ulrich, A. Potential syntrophic associations in anaerobic naphthenic acids biodegrading consortia inferred with microbial interactome networks. Journal of Hazardous Materials 397, 122678 (2020).
Lv, X., Ma, B., Cologgi, D., Lee, K. & Ulrich, A. Naphthenic acid anaerobic biodegrading consortia enriched from pristine sediments underlying oil sands tailings ponds. Journal of Hazardous Materials 394, 122546 (2020).
2019
Dai, Z., Liu, G., Chen, H., Chen, C., Wang, J., Ai, S., Wei, D., Li, D., Ma, B., Tang, C., Brookes, P.C., Xu, J., 2019. Long-term nutrient inputs shift soil microbial functional profiles of phosphorus cycling in diverse agroecosystems. The ISME Journal. doi:10.1038/s41396-019-0567-9
Feng, J., Xu, Y., Ma, B., Tang, C., Brookes, P.C., He, Y., Xu, J., 2019. Assembly of root-associated microbiomes of typical rice cultivars in response to lindane pollution. Environment International 131, 104975. doi:10.1016/j.envint.2019.104975
Lv, X., Zhao, K., Xue, R., Liu, Y., Xu, J., Ma, B., 2019. Strengthening Insights in Microbial Ecological Networks from Theory to Applications. MSystems 4, e00124-19. doi:10.1128/mSystems.00124-19
2018
Lv, X.; Kankan, Z.; Li, H.; Ma, B. Niche Partition of Phenanthrene-Degrading Bacteria along a Phragmites Australis Rhizosphere Gradient. Biology and Fertility of Soils 2018, 54 (5), 607–616.
https://doi.org/10.1007/s00374-018-1287-4
Ma, B.; Cai, Y.; Bork, E. W.; Chang, S. X. Defoliation Intensity and Elevated Precipitation Effects on Microbiome and Interactome Depend on Site Type in Northern Mixed-Grass Prairie. Soil Biology and Biochemistry 2018, 122, 163–172. https://doi.org/10.1016/j.soilbio.2018.04.015
Ma, B.; Lv, X.; Cai, Y.; Chang, S. X.; Dyck, M. F. Liming Does Not Counteract the Influence of Long-Term Fertilization on Soil Bacterial Community Structure and Its Co-Occurrence Pattern. Soil Biology and Biochemistry 2018, 123, 45–53. https://doi.org/10.1016/j.soilbio.2018.05.003
Ma, B.; Zhao, K.; Lv, X.; Su, W.; Dai, Z.; Gilbert, J. A.; Brookes, P. C.; Faust, K.; Xu, J. Genetic Correlation Network Prediction of Forest Soil Microbial Functional Organization. The ISME Journal 2018, 12 (10), 2492–2505. https://doi.org/10.1038/s41396-018-0232-8
Mamet, S. D.; Ma, B.; Ulrich, A.; Schryer, A.; Siciliano, S. D. Who Is the Rock Miner and Who Is the Hunter? The Use of Heavy-Oxygen Labeled Phosphate (P 18 O 4 ) to Differentiate between C and P Fluxes in a Benzene-Degrading Consortium. Environmental Science & Technology 2018, 52 (4), 1773–1786.
https://doi.org/10.1021/acs.est.7b05773
Yu, X.; Lee, K.; Ma, B.; Asiedu, E.; Ulrich, A. C. Indigenous Microorganisms Residing in Oil Sands Tailings Biodegrade Residual Bitumen. Chemosphere 2018, 209, 551–559. https://doi.org/10.1016/j.chemosphere.2018.06.126
2017
Ma, B.; Dai, Z.; Wang, H.; Dsouza, M.; Liu, X.; He, Y.; Wu, J.; Rodrigues, J. L. M.; Gilbert, J. A.; Brookes, P. C.; et al. Distinct Biogeographic Patterns for Archaea, Bacteria, and Fungi along the Vegetation Gradient at the Continental Scale in Eastern China. mSystems 2017, 2 (1), e00174-16.
https://doi.org/10.1128/mSystems.00174-16
Ma, B.; Li, X.; Chang, S. X. Capping Material Type Affects Rhizosphere Bacteria Community Structure in the Cover Soil in Oil Sands Reclamation. Journal of Soils and Sediments 2017, 17 (10), 2516–2523.
https://doi.org/10.1007/s11368-017-1696-2
2016
Cai, Y.; Chang, S. X.; Ma, B.; Bork, E. W. Watering Increased DOC Concentration but Decreased N2O Emission from a Mixed Grassland Soil under Different Defoliation Regimes. Biol Fertil Soils 2016, 52 (7), 987–996. https://doi.org/10.1007/s00374-016-1135-3
Li, H.; Dietrich, C.; Zhu, N.; Mikaelyan, A.; Ma, B.; Pi, R.; Liu, Y.; Yang, M.; Brune, A.; Mo, J. Age Polyethism Drives Community Structure of the Bacterial Gut Microbiota in the Fungus-Cultivating Termite O Dontotermes Formosanus: Gut Microbiota of Odontotermes Formosanus. Environmental Microbiology 2016, 18 (5), 1440–1451. https://doi.org/10.1111/1462-2920.13046
Ma, B.; Lv, X.; He, Y.; Xu, J. Assessing Adsorption of Polycyclic Aromatic Hydrocarbons on Rhizopus Oryzae Cell Wall Components with Water–methanol Cosolvent Model. Ecotoxicology and Environmental Safety 2016, 125, 55–60. https://doi.org/10.1016/j.ecoenv.2015.11.032
Ma, B.; Wang, H.; Dsouza, M.; Lou, J.; He, Y.; Dai, Z.; Brookes, P. C.; Xu, J.; Gilbert, J. A. Geographic Patterns of Co-Occurrence Network Topological Features for Soil Microbiota at Continental Scale in Eastern China. The ISME Journal 2016, 10 (8), 1891–1901.
https://doi.org/10.1038/ismej.2015.261
2015 and before
Ma, B.; Zhou, Z.-Y.; Zhang, C.-P.; Zhang, G.; Hu, Y.-J. Inorganic Phosphorus Fractions in the Rhizosphere of Xerophytic Shrubs in the Alxa Desert. Journal of Arid Environments 2009, 73 (1), 55–61.
https://doi.org/10.1016/j.jaridenv.2008.08.006
Wu, Y.; Ma, B.; Zhou, L.; Wang, H.; Xu, J.; Kemmitt, S.; Brookes, P. C. Changes in the Soil Microbial Community Structure with Latitude in Eastern China, Based on Phospholipid Fatty Acid Analysis. Applied Soil Ecology 2009, 43 (2–3), 234–240.
https://doi.org/10.1016/j.apsoil.2009.08.002
Ma, B.; Chen, H.; He, Y.; Wang, H.; Xu, J. Evaluation of Toxicity Risk of Polycyclic Aromatic Hydrocarbons (PAHs) in Crops Rhizosphere of Contaminated Field with Sequential Extraction. Journal of Soils and Sediments 2010, 10 (5), 955–963.
https://doi.org/10.1007/s11368-010-0212-8
Ma, B.; Chen, H.; Xu, M.; Hayat, T.; He, Y.; Xu, J. Quantitative Structure–activity Relationship (QSAR) Models for Polycyclic Aromatic Hydrocarbons (PAHs) Dissipation in Rhizosphere Based on Molecular Structure and Effect Size. Environmental Pollution 2010, 158 (8), 2773–2777.
https://doi.org/10.1016/j.envpol.2010.04.011
Ma, B.; He, Y.; Chen, H.; Xu, J.; Rengel, Z. Dissipation of Polycyclic Aromatic Hydrocarbons (PAHs) in the Rhizosphere: Synthesis through Meta-Analysis. Environmental Pollution 2010, 158 (3), 855–861.
https://doi.org/10.1016/j.envpol.2009.09.024
Hayat, T.; Ding, N.; Ma, B.; He, Y.; Shi, J.; Xu, J. Dissipation of Pentachlorophenol in the Aerobic–Anaerobic Interfaces Established by the Rhizosphere of Rice ( L.) Root. Journal of Environment Quality 2011, 40 (6), 1722.
https://doi.org/10.2134/jeq2010.0347
Ma, B.; Xu, M.; Wang, J.; Chen, H.; He, Y.; Wu, L.; Wang, H.; Xu, J. Adsorption of Polycyclic Aromatic Hydrocarbons (PAHs) on Rhizopus Oryzae Cell Walls: Application of Cosolvent Models for Validating the Cell Wall-Water Partition Coefficient. Bioresource Technology 2011, 102 (22), 10542–10547.
https://doi.org/10.1016/j.biortech.2011.08.013
Ma, B.; Wang, J.; Xu, M.; He, Y.; Wang, H.; Wu, L.; Xu, J. Evaluation of Dissipation Gradients of Polycyclic Aromatic Hydrocarbons in Rice Rhizosphere Utilizing a Sequential Extraction Procedure. Environmental Pollution 2012, 162, 413–421. https://doi.org/10.1016/j.envpol.2011.10.034
Ma, B.; Gong, J. A Meta-Analysis of the Publicly Available Bacterial and Archaeal Sequence Diversity in Saline Soils. World Journal of Microbiology and Biotechnology 2013, 29 (12), 2325–2334.
https://doi.org/10.1007/s11274-013-1399-9
Ma, B.; Lv, X.; Warren, A.; Gong, J. Shifts in Diversity and Community Structure of Endophytic Bacteria and Archaea across Root, Stem and Leaf Tissues in the Common Reed, Phragmites Australis, along a Salinity Gradient in a Marine Tidal Wetland of Northern China. Antonie van Leeuwenhoek 2013, 104 (5), 759–768. https://doi.org/10.1007/s10482-013-9984-3
Song, Y.; Zhang, X.; Ma, B.; Chang, S. X.; Gong, J. Biochar Addition Affected the Dynamics of Ammonia Oxidizers and Nitrification in Microcosms of a Coastal Alkaline Soil. Biology and Fertility of Soils 2014, 50 (2), 321–332. https://doi.org/10.1007/s00374-013-0857-8
Gong, J.; Shi, F.; Ma, B.; Dong, J.; Pachiadaki, M.; Zhang, X.; Edgcomb, V. P. Depth Shapes α- and β-Diversities of Microbial Eukaryotes in Surficial Sediments of Coastal Ecosystems: Diversity and Biogeography of Benthic Microeukaryotes. Environmental Microbiology 2015, 17 (10), 3722–3737.
https://doi.org/10.1111/1462-2920.12763
Ma, B.; Lyu, X.-F.; Zha, T.; Gong, J.; He, Y.; Xu, J.-M. Reconstructed Metagenomes Reveal Changes of Microbial Functional Profiling during PAHs Degradation along a Rice (Oryza Sativa) Rhizosphere Gradient. Journal of Applied Microbiology 2015, 118 (4), 890–900.
https://doi.org/10.1111/jam.12756